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Typus
Verschleierung
Bearbeiter
Hindemith
Gesichtet
Yes.png
Untersuchte Arbeit:
Seite: 41, Zeilen: 20-28
Quelle: Suerbaum et al 2001
Seite(n): 2556, Zeilen: l.col: 15ff
The sets of sequences were also tested by the homoplasy test. This test analyses the apparent homoplasies among informative, synonymous polymorphic sites. When the same site changes twice in the ancestry of a set of sequences homoplasies occur. The frequency of apparent homoplasies, as measured by the homoplasy ratio, indicates the frequency of recombination (Maynard Smith and Smith, 1998). The homoplasy ratio varies between 0, indicating completely clonal descent by the accumulation of mutations and 1, indicating free recombination where all sequence polymorphisms are found repeatedly in independent sequences that are in different branches of a maximal parsimony tree (apparent homoplasies).

Maynard Smith, J., and N. H. Smith, Detecting recombination from gene trees, Mol Biol Evol , 15 , 590-599, 1998.

The sets of sequences were tested with the homoplasy test (21), which analyzes the apparent homoplasies among informative, synonymous polymorphic sites. The frequency of apparent homoplasies, as measured by the homoplasy ratio, H, is an indicator of the frequency of recombination. The homoplasy ratio can vary between 0, indicating completely clonal descent by the accumulation of mutations, and 1, indicating free recombination where all sequence polymorphisms are found repeatedly in independent sequences that are in different branches of a maximal parsimony tree (apparent homoplasies).

21. Maynard Smith, J., and N. H. Smith. 1998. Detecting recombination from gene trees. Mol. Biol. Evol. 15:590–599.

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Sichter
(Hindemith) Schumann

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